Examples

Getting started

• Basic usage
  • Inference problem definition
  • Running the ABC inference
  • Visualization and analysis
• Fit SBML model

PEtab

• PEtab extention for FitMultiCell
  • Regular FitMultiCell problem
  • Define the problem using PEtab extention
• Fitting multiple conditions using PEtab format
  • Run the first condition without PEtab
  • Run the second condition without PEtab
  • Define the problem using PEtab extention
  • Multiple condition

Application examples

• Single cell motility
  • Model setup
  • Parameter recovery study
  • Details of summary statistics
• Classification

Summary statistics

• Cluster Count
• Cluster size
• Count Active infected Cell
• Count Cell types